Columns

This page describes the columns created by CDAPS in the network and node tables.

Network Columns

• Columns created in network table when invoking Run Community Detection

• name - String in format:

  Example:

• __CD_OriginalNetwork - SUID of parent network. (Bug Saving/reloading a Cytoscape session changes SUID and will cause View Interactions for Selected Node to fail)

• description - Contains string in this format:

  Example:

• prov:wasDerivedFrom - Name of parent network

• prov:wasGeneratedBy - Denotes version of CDAPS and algorithm used in this format:

  Example:

Node Columns

In the node table columns created by CDAPS are prefixed with CD_

• Columns created in node table when invoking Run Community Detection

• CD_MemberList - String of space delimited node names representing members of this cluster
• CD_MemberList_Size - Size of CD_MemberList
• CD_MemberList_LogSize - Log of CD_MemberList_Size
• CD_CommunityName - Name of community set by invocation of Run Functional Enrichment
• CD_AnnotatedMembers - String of space delimited node names used to set value in CD_CommunityName
• CD_AnnotatedMembers_Size - Size of CD_AnnotatedMembers
• CD_AnnotatedMembers_Overlap - CD_AnnotatedMembers_Size divided by CD_MemberList_Size
• CD_AnnotatedMembers_Pvalue - Pvalue obtained from term mapping algorithm invoked by Run Functional Enrichment
• CD_Labeled - Boolean denoting if CD_CommunityName was set to a value other then blank or (none)

• Columns created in node table when invoking Run Functional Enrichment

• CD_AnnotatedAlgorithm - Algorithm used to set value in CD_CommunityName in format:

  Example:

• CD_NonAnnotatedMembers - String of space delimited node names NOT used by algorithm to set mapped term in CD_CommunityName

• CD_AnnotatedMembers_SourceDB Source database used by algorithm to set mapped term in CD_CommunityName

• CD_AnnotatedMembers_SourceTerm Id of mapped term set in CD_CommunityName