CDAPS

Community Detection APplication and Service (CDAPS)

CDAPS performs multiscale community detection and functional enrichment for network analysis through a service-oriented architecture. These features are provided by integrating popular community detection algorithms and enrichment tools. All the algorithms and tools run remotely on a dedicated server.

Currently supported features:

• Community detection algorithms: Louvain, Infomap, OSLOM, CliXO, HiDeF
• Functional enrichment tools: g:Profiler, Enrichr, iQuery

Feature Requests and Reporting Bugs

The CDAPS GitHub issue tracker can be used to report a bug or request a feature.

To Report a bug:

• Go to https://github.com/cytoscape/cy-community-detection/issues
• Click on New Issue
• Write a short description of the issue. It is very helpful to provide a series of steps that can be taken to reproduce the issue.
• If possible attach a session file (.cys) or example input files.
• Enter App version, Cytoscape version and operating system.
• Click on Submit new issue

Cite CDAPS

Singhal A, Cao S, Churas C, Pratt D, Fortunato S, Zheng F, et al. (2020) Multiscale community detection in Cytoscape. PLoS Comput Biol 16(10): e1008239. https://doi.org/10.1371/journal.pcbi.1008239